SpliceMap Tool name | SpliceMap |
---|
URL | http://www.stanford.edu/group/wonglab/SpliceMap/ |
---|
Important features | 1. It is a tool used for identification of splice junction from RNA seq data.
2. Highly sensitive and specific.
3. It makes use of paired-end and long reads. |
---|
Citations | Au KF, Jiang H, Lin L, Xing Y, Wong WH. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Res. 2010 Aug;38(14):4570-8. Epub 2010 Apr 5. PubMed PMID: 20371516; PubMed Central PMCID: PMC2919714. |
---|
Year of publication | 2010 |
---|
Rank by usage frequency | 100 |
---|
Comments | |
---|
Function | RNA seq alignment |
---|
Category | Free, Downloadable |
---|
License | |
---|
Status | |
---|
Input file format | |
---|
Output file format | SAM |
---|
Operating system | Linux |
---|
Operating language | Python, C++ |
---|
Platform | |
---|
Maintained by | Kin Fai Au, John Mu, Stanford University
|
---|
Downloadable file format | |
---|
Submission file format | |
---|
| |